API Reference

• EasyLink Command-Line Interface
  • easylink
  • easylink.cli module
• Configuration
  • DEFAULT_ENVIRONMENT
  • SPARK_DEFAULTS
  • Config
  • load_params_from_specification()
  • _load_input_data_paths()
  • _load_computing_environment()
• Graph Components
  • InputSlot
  • OutputSlot
  • EdgeParams
  • StepGraph
  • ImplementationGraph
  • SlotMapping
  • InputSlotMapping
  • OutputSlotMapping
• Implementations
  • Implementation
  • NullImplementation
  • NullSplitterImplementation
  • NullAggregatorImplementation
  • PartialImplementation
• Pipeline
  • Pipeline
• Pipeline Graph
  • PipelineGraph
• Pipeline Schema
  • PipelineSchema
• Snakemake Rules
  • Rule
  • TargetRule
  • ImplementedRule
  • InputValidationRule
  • CheckpointRule
  • AggregationRule
• Runner
  • main()
  • _run_snakemake_with_filtered_output()
  • _filter_snakemake_output()
  • _get_singularity_args()
  • _get_environment_args()
  • _save_dag_image()
• Steps
  • Step
  • StandaloneStep
  • IOStep
  • InputStep
  • OutputStep
  • HierarchicalStep
  • TemplatedStep
  • LoopStep
  • CloneableStep
  • AutoParallelStep
  • SplitterStep
  • AggregatorStep
  • ChoiceStep
  • ConfigurationState
  • LeafConfigurationState
  • NonLeafConfigurationState
• Pipeline Schema Constants
  • Development Pipeline Schema Constants
  • Main EasyLink Pipeline Schema
  • Testing Pipeline Schema Constants
• Utilities
  • Utilities
  • Data Aggregating Utilities
  • Data Utilities
  • General Utilities
  • Filepaths
  • Data Splitting Utilities
  • Data Validation Utilities